I also use PAC Proxy method with this config. I deleted all of my whitelisted domains from the config.

function isYggdrasilIPv6(host) {
 host = host.replace(/^\[|\]$/g, "");
 var parts = host.split(":");
 if (parts.length < 2) return false;
 var first16 = parseInt(parts[0], 16);
 return first16 >= 0x200 && first16 <= 0x3FF;
}

function FindProxyForURL(url, host) {
 if (isYggdrasilIPv6(host)) {
 return "DIRECT";
 }

 if (dnsDomainIs(host, ".i2p")) {
 return "SOCKS5 192.168.1.X:4447";
 }

 if (dnsDomainIs(host, ".onion")) {
 return "SOCKS5 192.168.1.X:9050";
 }

 var whitelist = [
 ""
 ];

 for (var i = 0; i < whitelist.length; i++) {
 var domain = whitelist[i];
 if (host === domain || host.endsWith("." + domain)) {
 return "DIRECT";
 }
 }

 return "SOCKS5 192.168.1.X:9050";
}